We are developing a number of open-source software components as part of this project. They are listed below:

  • https://github.com/ml4ai/skema: This repository contains the code for the following capabilities:
    • Machine reading of scientific literature
    • Alignment of metadata
    • Comment extraction from source code
    • MathML parsing
    • Scientific model visualization (MOVIZ)
    • Structural alignment of code and equations
    • SKEMA web service that exposes many of the above capabilities via a REST API.
  • https://github.com/ml4ai/funman: This repository contains the code for the FUNMAN module, which performs functional model analysis on scientific model code.